| This tool is a short Python script (using Biopython library functions) to search nucleotide sequences for open reading frames (ORFs) or coding sequences (CDSs) where the first potential start codon is used. It is intended for very simplistic gene finding in Prokaryotes and viruses, or for finding the likely CDS in an EST or mRNA sequence. It is not suitable for Eurakoytic gene prediction since it is not intro aware. See also the EMBOSS tool ``getorf`` which also has a Galaxy wrapper. This offers much of the same functionality, but is likely faster as it is written in C. |
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/get_orfs_or_cdss
| Name | Version | Type | |
|---|---|---|---|
| biopython | 1.67 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| e.g. to get peptides from ESTs | 0.2.3 | 16.01 | |