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Repository gemini_load
Name: gemini_load
Owner: iuc
Synopsis: Wrapper for the gemini tool suite: GEMINI load
The intent of GEMINI (GEnome MINIing) is to provide a simple, flexible, and powerful framework for exploring genetic variation for
personal and medical genetics. GEMINI is unique in that it integrates genetic variation (from VCF files) with a wealth of genome
annotations into a unified database framework. Using this integrated database as the analysis framework, we aim to leverage the
expressive power of SQL for data analysis, while attempting to overcome the fundamental challenges associated with using databases for
very large (e.g. 1,000,000 variants times 1,000 samples yields one billion genotypes) datasets. In addition, by defining sample
relationships with a PED file, GEMINI allows one to explore and test for variants that meet specific inheritance models (e.g.,
recessive, dominant, etc.).
Type: unrestricted
Revision: 8:45296e47d565
This revision can be installed: True
Times cloned / installed: 1508
Dependencies of this repository

Repository data_manager_gemini_database_downloader revision 52b6a4d98009 owned by iuc

Contents of this repository

Name Description Version Minimum Galaxy Version
Loading a VCF file into GEMINI 0.20.1+galaxy2 16.01

Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data