hg clone https://toolshed.g2.bx.psu.edu/repos/jjjjia/cpo_prediction
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| This tool combines a collection result from cpo_prediction_parser into 1 file | 0.1.0 | 16.01 | |
| Modified version of mash 2.0 with custom database | 2.0 | 16.01 | |
| Modified Snippy v3.2 to support contig inputs for the cpo_prediction workflow | 3.2 | 16.01 | |
| Modified plasmidfinder v0.8 with custom database | 0.8 | 16.01 | |
| Modified MLST v2.11 to support for the cpo_prediction workflow | 2.11 | 16.01 | |
| This tool makes a phylogenetic tree using data from snippy alignments, clustalw NJ tree and metadat from cpo_prediction workflow using ETE3 | 0.1.0 | 16.01 | |
| Modified version of clustalw2 v2.1 to produce NJ trees from an SNIPPY produced alignment | 2.1 | 16.01 | |
| Modified version of RGI to make it support galaxy without using a datatable by using the --local flag | 4.0.3 | 16.01 | |
| This tool combines outputs from MLST, ResFinder, PlasmidFinder, Mobsuite, RGI into a TSV for the cpo_prediction workflow | 0.1.0 | 16.01 | |
| Modified Mobsuite (Mob-Recon) v1.4.8 to add the mob_typer for the cpo_prediction workflow | 1.4.8 | 16.01 | |
| modified snippy-dist v0.6 to the tree drawer of the cpo_predictions workflow | 0.6 | 16.01 | |
| Modified version of Resfinder 0.8 to use custom carbapenamase database | 0.8 | 16.01 | |