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Repository ena_webin_cli
Name: ena_webin_cli
Owner: iuc
Synopsis: Submits a genome assembly to the European Nucleotide Archive (ENA) using the Webin-CLI Submission tool.
The program submits genome assembly file(s) and respective metadata to the European Nucleotide Archive (ENA). 
The metadata can be filled in the UI of the tool or extracted from the submission receipt of the raw data submission tool.
Content homepage: https://ena-docs.readthedocs.io/en/latest/submit/general-guide/webin-cli.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/ena_webin_cli/361a6693aa25
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ena_webin_cli
Type: unrestricted
Revision: 2:361a6693aa25
This revision can be installed: True
Times cloned / installed: 65

Repository README files - may contain important installation or license information

Readme files

Webin CLI wrapper

the submission of genome assemblies using the [Webin-cli](https://github.com/enasequence/webin-cli)

This is a Galaxy wrapper for webin cli tool from ENA.

Setting up credentials on Galaxy

Enable users to set their own credentials for this tool. To enable it, make sure the file config/user_preferences_extra_conf.yml has the following section:

ena_webin_account:
    description: Your ENA Webin account details
    inputs:
        - name: webin_id
          label: ENA Webin ID
          type: text
          required: False
        - name: password
          label: Password
          type:  password
          required: False

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Submission of consensus sequences to the European Nucleotide Archive (ENA) 9.0.1+galaxy1 24.2

Categories
Data Export - Tools for exporting data to various destinations