Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository spades_coronaspades
Name: spades_coronaspades
Owner: iuc
Synopsis: SARS-CoV-2 de novo genome assembler.
Due to an increased interest in coronavirus research, a coronavirus assembly mode for SPAdes assembler has been developed (a.k.a coronaSPAdes).
It enables assembly of full-length coronaviridae genomes from the transcriptomic and metatranscriptomic data.
Content homepage: https://github.com/ablab/spades
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/spades_coronaspades/34305b013402
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/spades_coronaspades
Type: unrestricted
Revision: 8:34305b013402
This revision can be installed: True
Times cloned / installed: 284

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
SARS-CoV-2 de novo genome assembler 3.15.4+galaxy2 20.01

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Metagenomics - Tools enabling the study of metagenomes