This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository cravat
Name: cravat
Owner: insilicosolutions
Synopsis: Annotates mutations with CRAVAT
Mutations in hg19 genomic coordinates can be annotated with CRAVAT (Cancer-Related Analysis of VAriants Toolkit). Annotations include VEST mutation pathogenicity score, COSMIC, dbSNP, allele frequencies (1000 Genomes, ESP6500, and ExAC), mappability warnings, TARGET (tumor alterations relevant for genomics-driven therapy), PubMed, and mapping to 3D-structures.
Content homepage: http://www.cravat.us
Link to this repository: https://toolshed.g2.bx.psu.edu/view/insilicosolutions/cravat/c13857bac2c4
Type: unrestricted
Revision: 1:c13857bac2c4
This revision can be installed: True
Times cloned / installed: 94

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
CRAVAT annotation 1.0.0 any
VCF to CRAVAT input format conversion 1.0.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
Web Services - Tools enabling access to web services