| SNPtools centers around TRAMS (Tool for Rapid Annotation of Microbial SNPs), a tool that annotates SNPs from a (tab-delimited) SNP file and a reference genbank / embl file (containing the genome sequence).
Other small tools help use TRAMS in a workflow. gbk_to_fasta creates a sequence fasta file from a genbank file, snpsplit splits MNPs to separate lines and tablemerger can merge multiple SNP tables to allow co-annotation of SNPs in various strains compared to a single reference |
hg clone https://toolshed.g2.bx.psu.edu/repos/rreumerman/snptools
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Tool for Rapid Annotation of Microbial SNPs | 1.0.0 | any | |
| splits multicharacter entries into separate lines | 1.0.0 | any | |
| produces a Fasta file from a genbank file | 1.0.0 | any | |
| merges any number of SNP tables into one | 1.0.0 | any | |