| Installls https://sourceforge.net/projects/subread/files/subread-1.5.0-p1
"The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10):e108" Source: https://sourceforge.net/projects/subread/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/brenninc/package_subread_1_5_0_p1
| Name | Version | Type | |
|---|---|---|---|
| subread | 1.5.0-p1 | package | |