Repository fbqs_integrator
Name: fbqs_integrator
Owner: maciek
Synopsis: A tool for merging quality-checked outputs from Fastp, Bracken, and QUAST into a consolidated STARAMR Excel report
Includes Fastp, Bracken, and Quast results into STARAMR spreadsheet output. Input files are tooldistillator outputs from the Abromics Workflow, in JSON or EXCEL format. Perform quality check at the same time.
Contributors: Elena Lavinia Diaconu (elena.diaconu@izslt.it), Maciej Kochanowski (maciej.kochanowski@piwet.pulawy.pl), Sebastien Leclercq (sebastien.leclercq@inrae.fr).
Developed as part of the SPAMR-VET Consortium (EUPAHW).
Link to this repository: https://toolshed.g2.bx.psu.edu/view/maciek/fbqs_integrator/9cadfa80fc35
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/maciek/fbqs_integrator
Type: unrestricted
Revision: 11:9cadfa80fc35
This revision can be installed: True
Times cloned / installed: 97

Contents of this repository

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Name Description Version Minimum Galaxy Version
Merge quality-checked outputs from Fastp, Bracken and QUAST into consolidated STARAMR Excel report 1.0.0 21.05

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Assembly - Tools for working with assemblies