|medaka is a tool to create a consensus sequence from nanopore sequencing data. |
This task is performed using neural networks applied from a pileup of individual
sequencing reads against a draft assembly. It outperforms graph-based methods
operating on basecalled data, and can be competitive with state-of-the-art
signal-based methods, whilst being much faster.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant
|Name||Description||Version||Minimum Galaxy Version|
|decodes variant calls from medaka consensus output||1.3.2+galaxy1||20.01|