Repository sopra
Name: sopra
Owner: crs4
Synopsis: SOPRA
Wrapper for SOPRA (Statistical Optimization of Paired Read Assembly), an assembler for mate pair/paired-end reads from high-throughput sequencing platforms, e.g. Illumina and SOLiD. A tool for the "SOPRA with prebuilt contigs" workflow is provided.
Development repository: https://bitbucket.org/crs4/orione-tools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/crs4/sopra/87ffe493b6c1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/crs4/sopra
Type: unrestricted
Revision: 2:87ffe493b6c1
This revision can be installed: True
Times cloned / installed: 394
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_bowtie_1_0_0 revision 9fcaaedbbfd6 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie 1.0.0 package
sopra 1.4.6 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
for Illumina libraries 0.1 any

Categories
Assembly - Tools for working with assemblies