Repository fermi2
Name: fermi2
Owner: iuc
Synopsis: Wrapper for the fermikit tool: fermi2
FermiKit is a de novo assembly based variant calling pipeline for deep Illumina resequencing data.
It assembles reads into unitigs, maps them to the reference genome and then
calls variants from the alignment to an accuracy comparable to conventional mapping based pipelines.
Content homepage: https://github.com/lh3/fermikit
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/fermi2/b59546214e63
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/fermi2
Type: unrestricted
Revision: 0:b59546214e63
This revision can be installed: True
Times cloned / installed: 145

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
assembles Illumina reads into unitigs 0.14.dev1 any

Categories
Assembly - Tools for working with assemblies
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA