| FermiKit is a de novo assembly based variant calling pipeline for deep Illumina resequencing data. It assembles reads into unitigs, maps them to the reference genome and then calls variants from the alignment to an accuracy comparable to conventional mapping based pipelines. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/fermi2
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| assembles Illumina reads into unitigs | r193+galaxy0 | 16.01 | |