| This is a Galaxy wrapper for the nmrml2isa python package tool.
Full documentation: http://2isa.readthedocs.io/en/latest/ Python PyPi package: https://pypi.python.org/pypi/mzml2isa/ Github code: https://github.com/ISA-tools/mzml2isa nmrml2isa is a program that allows you to convert metabolomic studies in .mzML format to the open ISA-Tab standard supported by the MetaboLights database. The recommended installation is by means of the toolshed (https://toolshed.g2.bx.psu.edu/). Dependencies should be installed automatically when using Galaxy version >= 16.10. The dependencies are dealt with Bioconda. To ensure that Bioconda is working check to make sure the following settings are in the config/galaxy.ini file. # dependencies before each job runs. conda_auto_install = True # Set to True to instruct Galaxy to install Conda from the web automatically # if it cannot find a local copy and conda_exec is not configured. conda_auto_init = True |
hg clone https://toolshed.g2.bx.psu.edu/repos/tomnl/nmrml2isa
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Parser to get meta information from nmrML files and create an ISA-Tab structure | 0.1.0 | any | |