|MUMmer is a system for rapidly aligning entire genomes. The current version (release 4.x) can find all 20 base pair maximal exact matches between two bacterial genomes of ~5 million base pairs each in 20 seconds, using 90 MB of memory, on a typical 1.8 GHz Linux desktop computer.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummer
|Minimum Galaxy Version
|Align two or more sequences