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Repository snpsift_genesets
Name: snpsift_genesets
Owner: iuc
Synopsis: Annotate SnpEff vcf with genesets such as Gene Ontology (GO), KEGG, Reactome
Gene set annotations, such as Gene Ontology (GO), KEGG, Reactome, etc.,
can be added to a SnpEff annotated file using SnpSift geneSets command.
The VCF file must be annotated using SnpEff before perforimg Gene Sets annotations.
Content homepage: http://snpeff.sourceforge.net/SnpSift.html#geneSets
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_genesets/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/snpsift_genesets/d12a810c837e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpsift_genesets
Type: unrestricted
Revision: 5:d12a810c837e
This revision can be installed: True
Times cloned / installed: 512

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Annotating GeneSets, such as Gene Ontology, KEGG, Reactome 4.3.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA