|Currently only some tools have been wrapped.
Contact me if you want to contribute.
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. It is a collection of command line programs for unix-style operating systems written in Perl and C++. HOMER was primarily written as a de novo motif discovery algorithm and is well suited for finding 8-20 bp motifs in large scale genomics data. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.
hg clone https://toolshed.g2.bx.psu.edu/repos/kevyin/homer
|Name||Description||Version||Minimum Galaxy Version|
|Homer's peakcaller. Requires tag directories (see makeTagDirectory)||0.1.2||any|
|Simple wrapper for makeTagDirectory. Used by findPeaks||1.0.1||any|