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Repository homer
Name: homer
Owner: kevyin
Synopsis: Software for motif discovery and next generation sequencing analysis. Garvan Institute, GVL
Currently only some tools have been wrapped.
Contact me if you want to contribute.

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.  It is a collection of command line programs for unix-style operating systems written in Perl and C++. HOMER was primarily written as a de novo motif discovery algorithm and is well suited for finding 8-20 bp motifs in large scale genomics data.  HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.

http://biowhat.ucsd.edu/homer/index.html
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/kevyin/homer
Type: unrestricted
Revision: 28:f0b5827b6051
This revision can be installed: True
Times cloned / installed: 872
Dependencies of this repository

Name Version Type
homer 4.1 package

Contents of this repository

Name Description Version Minimum Galaxy Version
1.0.0 any
1.0.0 any
Homer's peakcaller. Requires tag directories (see makeTagDirectory) 0.1.2 any
Simple wrapper for makeTagDirectory. Used by findPeaks 1.0.1 any
0.0.5 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis