| Currently only some tools have been wrapped.
Contact me if you want to contribute. HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. It is a collection of command line programs for unix-style operating systems written in Perl and C++. HOMER was primarily written as a de novo motif discovery algorithm and is well suited for finding 8-20 bp motifs in large scale genomics data. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets. http://biowhat.ucsd.edu/homer/index.html |
hg clone https://toolshed.g2.bx.psu.edu/repos/kevyin/homer
| Name | Version | Type | |
|---|---|---|---|
| homer | 4.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 1.0.0 | any | ||
| 1.0.0 | any | ||
| Homer's peakcaller. Requires tag directories (see makeTagDirectory) | 0.1.2 | any | |
| Simple wrapper for makeTagDirectory. Used by findPeaks | 1.0.1 | any | |
| 0.0.5 | any | ||