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Repository pangolin
Name: pangolin
Owner: iuc
Synopsis: Pangolin assigns SARS-CoV-2 genome sequences their most likely lineages under the Pango nomenclature system.
Pangolin uses a multinomial logistic regression model to classify SARS-CoV-2 query genomes into known Pango outbreak lineages. It reads genomes in FASTA format and produces lineage outputs in tabular format.  The model was trained on curated results from a global maximum likelihood tree of 30,000 genomes made available by GISAID.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/pangolin
Type: unrestricted
Revision: 5:42a174224817
This revision can be installed: True
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Contents of this repository

Name Description Version Minimum Galaxy Version
Phylogenetic Assignment of Outbreak Lineages 3.1.4+galaxy0 20.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis