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Repository samblaster
Name: samblaster
Owner: iuc
Synopsis: samblaster marks duplicates and can output split and discordant alignments from SAM/BAM files
samblaster is a fast and flexible program for marking duplicates in read-id
grouped paired-end SAM files. It can also optionally output discordant
read pairs and/or split read mappings to separate SAM files, and/or
unmapped/clipped reads to a separate FASTQ file. When marking duplicates,
samblaster will require approximately 20MB of memory per 1M read pairs.
Content homepage: https://github.com/GregoryFaust/samblaster
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/samblaster
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/samblaster/037e8ed9d3c9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samblaster
Type: unrestricted
Revision: 2:037e8ed9d3c9
This revision can be installed: True
Times cloned / installed: 233

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
marks duplicates, outputs split reads, discordant read pairs and unmapped reads 0.1.26+galaxy0 23.1

Categories
SAM - Tools for manipulating alignments in the SAM format
Fastq Manipulation - Tools for manipulating fastq data
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA