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Repository metagene_annotator

Name: metagene_annotator

Owner: galaxyp

Synopsis: MetaGeneAnnotator gene-finding program for prokaryote and phage

Detailed description:

MetaGeneAnnotator (MGA) precisely predicts all kinds of
prokaryotic genes from a single or a set of anonymous
genomic sequences having a variety of lengths.
The MGA integrates statistical models of prophage genes,
in addition to those of bacterial and archaeal genes,
and also uses a self-training model from input sequences
for predictions. As a result, the MGA sensitively detects
not only typical genes but also atypical genes, such as
horizontally transferred and prophage genes in a
prokaryotic genome.

MetaGeneAnnotator results are used by sixgill to generate
metapeptides.

http://metagene.cb.k.u-tokyo.ac.jp/

doi: 10.1093/dnares/dsn027

Content homepage: http://metagene.nig.ac.jp/

Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/metagene_annotator

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/galaxyp/metagene_annotator/b04960a7abf5

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/metagene_annotator

Type: unrestricted

Revision: 0:b04960a7abf5

This revision can be installed: True

Times cloned / installed: 262

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
MetaGeneAnnotator View tool metadata	gene-finding program for prokaryote and phage (used by sixgill)	1.0.0	16.01