|LoFreq is a fast and sensitive variant-caller for inferring SNVs and indels|
from next-generation sequencing data. It makes full use of base-call qualities
and other sources of errors inherent in sequencing (e.g. mapping or base/indel
alignment uncertainty), which are usually ignored by other methods or only
used for filtering.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual
|Name||Description||Version||Minimum Galaxy Version|
|into a BAM file||2.1.4+galaxy0||16.01|