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Repository meme_chip
Name: meme_chip
Owner: iuc
Synopsis: Performs motif discovery, motif enrichment analysis and clustering on large nucleotide datasets.
MEME-ChIP performs motif discovery, motif enrichment analysis and clustering on large nucleotide datasets.
The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences.  It provides motif
discovery algorithms using both probabilistic (MEME) and discrete models (MEME), which have complementary
strengths.  It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2).  In
addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs
(FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing motifs to known motifs
(Tomtom), finding preferred spacings between motifs (SpaMo), predicting the biological roles of motifs
(GOMo), measuring the positional enrichment of sequences for known motifs (CentriMo), and analyzing
ChIP-seq and other large datasets (MEME-ChIP).  The MEME Suite is comprised of a collection of tools
that work together.
Content homepage: http://meme-suite.org/
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/meme_chip
Type: unrestricted
Revision: 3:cc100e0f61f4
This revision can be installed: True
Times cloned / installed: 499

Contents of this repository

Name Description Version Minimum Galaxy Version
- motif discovery, enrichment analysis and clustering on large nucleotide datasets 4.11.2+galaxy1 16.01

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.