| This tool is a suite of matrix manipulation tools, allowing you to modified a matrix in many ways.
The tool features: 1) Matrix multiplication or correlation of one or two matrices. 2) Matrix Transformations – Log, Ln, mean center, median, plus z score normalizations, offsets, and scaling. 3) Data Filters – upper and lower limits, NAN limits and percent, variance count and percent. 4) Matrix Validation – missing or invalid data It requires both column headers (row one) and row headers (column one). You can put any data in the headers if you are not preparing for later clustering. A very useful tool to modify a matrix used for input into the NG-CHM heat map tools for clustering and visualization of heat maps that are also in the Galaxy Tool Shed. |
hg clone https://toolshed.g2.bx.psu.edu/repos/md-anderson-bioinformatics/matrix_manipulation
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Locate and identify non-numbers | 2.2 | 16.01 | |
| rows or columns based on specified threshold | 2.1.12 | 16.01 | |
| by Rows, Columns, All by method | 2.2 | 16.01 | |
| into separate tab delimited files | 1.0 | 16.01 | |
| Data manipulation before heatmap creation | 1.2.4 | 16.01 | |
| View metadata about Heat Map Matrix | 1.1.5 | 16.01 | |
| one matrix using one or two matrices | 1.2.4 | 16.01 | |