Repository matrix_manipulation
Synopsis: Matrix manipulation tools
This tool is a suite of matrix manipulation tools, allowing you to modified a matrix in many ways.

The tool features:
1) Matrix multiplication or correlation of one or two matrices.
2) Matrix Transformations – Log, Ln, mean center, median, plus z score normalizations, offsets, and scaling.
3) Data Filters – upper and lower limits, NAN limits and percent, variance count and percent.
4) Matrix Validation – missing or invalid data

It requires both column headers (row one) and row headers (column one).   You can put any data in the headers if you are not preparing for later clustering.

A very useful tool to modify a matrix used for input into the NG-CHM heat map tools for clustering and visualization of heat maps that are also in the Galaxy Tool Shed.

Type: unrestricted
Revision: 1:f1bcd79cd923
This revision can be installed: True
Times cloned / installed: 125

Contents of this repository

Name Description Version Minimum Galaxy Version
Locate and identify non-numbers 2.2 16.01
rows or columns based on specified threshold 2.1.12 16.01
by Rows, Columns, All by method 2.2 16.01
into separate tab delimited files 1.0 16.01
Data manipulation before heatmap creation 1.2.4 16.01
View metadata about Heat Map Matrix 1.1.5 16.01
one matrix using one or two matrices 1.2.4 16.01

Convert Formats - Tools for converting data formats
Data Managers - Utilities for Managing Galaxy's built-in data cache
Data Source - Tools for retrieving data from external data sources
Imaging - Utilities to support imaging
Micro-array Analysis - Tools for performing micro-array analysis
Phylogenetics - Tools for performing phylogenetic analysis
Statistics - Tools for generating statistics
Visualization - Tools for visualizing data