Repository abricate

Name: abricate

Owner: iuc

Synopsis: Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with multiple databases: NCBI, CARD, ARG-ANNOT, Resfinder, NCBI, EcOH, PlasmidFinder, Ecoli_VF and VFDB.

Detailed description:

Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with
multiple databases: NCBI, CARD, ARG-ANNOT, Resfinder, NCBI, EcOH, PlasmidFinder, Ecoli_VF and VFDB.

Content homepage: https://github.com/tseemann/abricate

Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/abricate

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/abricate/31f58ec0459a

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/abricate

Type: unrestricted

Revision: 11:31f58ec0459a

This revision can be installed: True

Times cloned / installed: 1615

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
ABRicate View tool metadata	Mass screening of contigs for antimicrobial and virulence genes	1.4.0	25.0
ABRicate List View tool metadata	List all of abricate's available databases.	1.4.0	25.0
ABRicate Summary View tool metadata	Combine ABRicate results into a simple matrix of gene presence/absence	1.4.0	25.0