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Repository rgrnastar
Name: rgrnastar
Owner: iuc
Synopsis: RNA STAR is an ultra fast universal RNA and scRNA-seq aligner and mapper
An ultra fast universal RNA-seq aligner that can optionally perform gene-level quantification on the fly.
Note that while very fast, this tool requires a considerable amount of memory. As an example, hg19 requires about 30GB. See http://gettinggeneticsdone.blogspot.com.au/2012/11/star-ultrafast-universal-rna-seq-aligner.html
Most of this wrapper was originally written by Jeremy Goecks, with kibbitzing and automated dependency installation by Ross Lazarus.
Content homepage: https://github.com/alexdobin/STAR
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/rgrnastar/bc685d13b637
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar
Type: unrestricted
Revision: 1:bc685d13b637
This revision can be installed: True
Times cloned / installed: 9903
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_rnastar_2_4_0d revision 54c96a529c59 owned by iuc (prior install required)
Repository package_samtools_0_1_19 revision c9bd782f5342 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
rnastar 2.4.0d package
samtools 0.1.19 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Gapped-read mapper for RNA-seq data 2.4.0d any

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data