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Repository package_mgescan_3_0_0

Name: package_mgescan_3_0_0

Owner: hyungrolee

Synopsis: Contains a tool dependency definition that downloads and compiles version 3.0.0 of mgescan.

Detailed description:

MGEScan - software packages to identify long terminal repeats (LTR) and
        non-LTR retroelements in eukaryotic genomic sequence

        MGEScan is now avaiable on a Galaxy workflow system for identifying
        long terminal repeats (LTR) and non-LTR retroelements in eukaryotic
        genomic sequences. With a Galaxy scientific workflow system, MGEScan
        becomes easier to manage input and output data through its rich and
        flexible web interface. UCSC Table Browser, ENA Browser or local
        storage is used to obtain input genome sequences including a
        traditional file upload. HMMER 3.1b1 is applied to gain speed boosts
        compared to a previous version HMMER 2+. In addition Generic Feature
        Format Version 3 is used for visualization of genome sequence data via
        a web-based genome browser e.g. UCSC Genome Browser or Ensembl Genome
        Browser.

Content homepage: http://mgescan.readthedocs.org

Development repository: https://github.com/MGEScan/mgescan/tree/master/galaxy-toolshed/packages/package_mgescan_3_0_0

Link to this repository: https://toolshed.g2.bx.psu.edu/view/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/hyungrolee/package_mgescan_3_0_0

Type: tool_dependency_definition

Revision: 2:85a4d7be4f65

This revision can be installed: True

Times cloned / installed: 301