staramr - Scans genome contigs (in FASTA format) against the ResFinder, PlasmidFinder, and PointFinder databases to search for antimicrobial resistance genomes. Makes predictions of the drugs these genes give resistance to. |
hg clone https://toolshed.g2.bx.psu.edu/repos/nml/staramr
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
Scans genome assemblies against the ResFinder, PlasmidFinder, and PointFinder databases searching for AMR genes. | 0.8.0+galaxy0 | 16.04 |