Repository methylkit
Name: methylkit
Owner: rnateam
Synopsis: A method for DNA methylation analysis and annotation from high-throughput bisulfite sequencing.
methylKit is an R package for DNA methylation analysis and annotation
from high-throughput bisulfite sequencing. The package is designed to deal with
sequencing data from RRBS and its variants, but also target-capture methods and
whole genome bisulfite sequencing. It also has functions to analyze base-pair
resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq.
Perl is needed to read SAM files only.
Content homepage: http://bioconductor.org/packages/release/bioc/html/methylKit.html
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/methylkit
Link to this repository: https://toolshed.g2.bx.psu.edu/view/rnateam/methylkit/a8705df7c57f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/methylkit
Type: unrestricted
Revision: 0:a8705df7c57f
This revision can be installed: True
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Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
DNA methylation analysis and annotation 0.99.2 any

Categories
Epigenetics - Tools for analyzing Epigenetic/Epigenomic datasets