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Repository fermikit_variants
Name: fermikit_variants
Owner: iuc
Synopsis: Wrapper for the fermikit tool: fermikit-variants
FermiKit is a de novo assembly based variant calling pipeline for deep Illumina resequencing data.
It assembles reads into unitigs, maps them to the reference genome and then
calls variants from the alignment to an accuracy comparable to conventional mapping based pipelines.
Content homepage: https://github.com/lh3/fermikit
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/fermikit_variants/ed056d243455
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/fermikit_variants
Type: unrestricted
Revision: 1:ed056d243455
This revision can be installed: True
Times cloned / installed: 277

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
call variants from genome-aligned contigs 0.14.dev1+galaxy1 16.01

Categories
Assembly - Tools for working with assemblies
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA