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Repository rbpbench
Name: rbpbench
Owner: rnateam
Synopsis: Evaluate CLIP-seq and other genomic region data using a comprehensive collection of RBP binding motifs
RBPBench is multi-function tool to evaluate CLIP-seq and other genomic region 
data using a comprehensive collection of known RBP binding motifs. RBPBench can 
be used for a variety of purposes, from RBP motif search (database or user-supplied 
RBPs) in genomic regions, over motif co-occurrence analysis, to benchmarking 
CLIP-seq peak caller methods as well as comparisons across cell types and 
CLIP-seq protocols.
Type: unrestricted
Revision: 1:b022c6591515
This revision can be installed: True
Times cloned / installed: 139

Contents of this repository

Name Description Version Minimum Galaxy Version
- Evaluate CLIP-seq and other genomic region data using a comprehensive collection of RBP binding motifs 0.7+galaxy0 22.05

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
RNA - Utilities for RNA
CLIP-seq - Tools for CLIP-seq