Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes preprocessing, visualization, clustering, pseudotime and trajectory inference and differential expression testing. Scanpy-scripts provides a set of command-line wrapper scripts that are composed from Scanpy API for easy execution of common analysis. |
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
to derive kNN graph | 1.8.1+galaxy9 | 18.01 |