Repository proteogenomics_splice_junc_search_db
Name: proteogenomics_splice_junc_search_db
Owner: galaxyp
Synopsis: Generate Novel Splice Junction Search DBs from RNAseq
Workflows generate a protein fasta and a bed file for novel 
splice junctions identified from RNAseq data
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/proteogenomics_splice_junc_search_db
Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/proteogenomics_splice_junc_search_db/3e7ebf62c90f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/proteogenomics_splice_junc_search_db
Type: unrestricted
Revision: 0:3e7ebf62c90f
This revision can be installed: True
Times cloned / installed: 186
Dependencies of this repository

Repository dependencies - This workflow requires a number of different repositories.
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam
Repository package_tophat_1_4_0 revision 0fea0c8cc6cf owned by devteam
Repository package_biopython_1_62 revision 0c222681d6d5 owned by biopython
Repository package_numpy_1_7 revision 300877695495 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository filter_bed_on_splice_junctions revision 915e5c5e02e6 owned by jjohnson

Categories
Proteomics - Tools enabling the study of proteins