Repository featurecounts

Name: featurecounts

Owner: iuc

Synopsis: featureCounts counts the number of reads aligned to defined masked regions in a reference genome

Detailed description:

Counts reads aligned to annotated genes in a reference genome from SAM or BAM files.

Content homepage: https://subread.sourceforge.net/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/featurecounts/1b851f87fbe0

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/featurecounts

Type: unrestricted

Revision: 33:1b851f87fbe0

This revision can be installed: True

Times cloned / installed: 19586

Repository README files - may contain important installation or license information

FeatureCounts wrapper for Galaxy

FeatureCounts as part of the SUBREAD package is "a highly efficient and accurate read summarization program".

Installation

This wrapper requires Galaxy 16.04 to be fully functional because of the following commits:

featureCounts:

GPL (>=3)

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
featureCounts View tool metadata	Measure gene expression in RNA-Seq experiments from SAM or BAM files	2.0.6+galaxy0	20.09

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Measure gene expression in RNA-Seq experiments from SAM or BAM files

2.0.6+galaxy0

20.09