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Repository picard
Name: picard
Owner: devteam
Synopsis: Picard SAM/BAM manipulation tools.
SAM (Sequence Alignment/Map) is a generic format for storing large
nucleotide sequence alignments. Picard comprises Java-based utilities that manipulate
SAM files, and a Java API (SAM-JDK) for creating new programs that read and write
SAM files. Both SAM text format and SAM binary (BAM) format are supported.
Content homepage: http://broadinstitute.github.io/picard/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/picard/ab1f60c26526
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/picard
Type: unrestricted
Revision: 4:ab1f60c26526
This revision can be installed: True
Times cloned / installed: 18334
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_picard_1_56_0 revision 99a28567c3a3 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
picard 1.56.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
1.56.0 any
1.56.0 any
for targeted resequencing data 1.56.0 any
1.56.0 any
creates an unaligned BAM file 1.56.0 any
for paired data 1.56.0 any
1.56.0 any
1.56.0 any
1.56.0 any
for PAIRED data 1.56.0 any
1.56.0 any
creates a FASTQ file 1.56.1 any
1.56.0 any

Categories
SAM - Tools for manipulating alignments in the SAM format