Repository go_enrichment
Name: go_enrichment
Owner: nanettec
Synopsis: GO enrichment of eQTL hotspot gene lists
### This is the last tool in the eQTL backend pipeline: 
lookup, classification, frequency, sliding window frequency, hotspots, GO enrichment

Link to the workflow (for import into Galaxy): http://chewbacca.bi.up.ac.za:8080/u/nanette/w/back-end-workflow-2

This tool uses the topGO R package to determine the enriched GO terms, for one or more gene lists simultaneously.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/nanettec/go_enrichment/007baf9662c6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nanettec/go_enrichment
Type: unrestricted
Revision: 1:007baf9662c6
This revision can be installed: True
Times cloned / installed: 292
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
R_SCRIPT_PATH set_environment

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
of eQTL hotspot gene lists 5.0.0 any

Categories
Genome-Wide Association Study - Utilities to support Genome-wide association studies