Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository seq2hla
Name: seq2hla
Owner: iuc
Synopsis: Precision HLA typing and expression from RNAseq data
seq2HLA is an in-silico method, written in python and R, 
which takes standard RNA-Seq sequence reads in fastq format as input, 
uses a bowtie index comprising all HLA alleles and outputs 
the most likely HLA class I and class II genotypes (in 4 digit resolution),
a p-value for each call, and the expression of each class
Clone this repository: hg clone
Type: unrestricted
Revision: 0:52bba1cd3823
This revision can be installed: True
Times cloned / installed: 263

Contents of this repository

Name Description Version Minimum Galaxy Version
HLA genotype and expression from RNA-seq 2.2.0 16.01

Sequence Analysis - Tools for performing Protein and DNA/RNA analysis