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Repository mismatch_frequencies
Name: mismatch_frequencies
Owner: mvdbeek
Synopsis: calculate mismatch frequencies for individual nucleotide mismatches
Given a set of aligned reads in BAM/SAM format, calculates and plots the frequency of all possible nucleotide mismatches with respect to the reference sequence.
Content homepage: http://drosophile.org/
Development repository: https://bitbucket.org/drosofff/gedtools/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/mvdbeek/mismatch_frequencies/2974c382105c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/mismatch_frequencies
Type: unrestricted
Revision: 2:2974c382105c
This revision can be installed: True
Times cloned / installed: 254

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Analyze mismatch frequencies in BAM/SAM alignments 0.1.0 16.01

Categories
RNA - Utilities for RNA
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis