Galaxy |

Repository mira_assembler

Name: mira_assembler

Owner: peterjc

Synopsis: Assemble with MIRA v3. Takes Sanger, Roche, and Illumina data

Detailed description:

Wrapper for core functionality of assembly tool MIRA 3.4.

Sanger capillary, Roche 454, Ion Torrent and Solexa/Illumina data,
and reference backbone sequences are all accepted as inputs.

The key MIRA output files are captured, but the other files are
deleted when the job finishes.

WARNING: This was written to write viral genome assembly and mapping
pipelines within Galaxy, and while it should work for larger organisms
like bacteria, the computational load would be much higher. Proceed with
caution!

Content homepage: http://chevreux.org/projects_mira.html

Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/mira3/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/mira_assembler/63ebe9726219

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler

Type: unrestricted

Revision: 12:63ebe9726219

This revision can be installed: True

Times cloned / installed: 1209

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
MIRA	3.4.1.1	package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Assemble with MIRA v3.4 View tool metadata	Takes Sanger, Roche, Illumina, and Ion Torrent data	0.0.11	any

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Takes Sanger, Roche, Illumina, and Ion Torrent data

0.0.11

any