Galaxy-chado
Galaxy tools to interface with Tripal using python-chado
Dependencies
You will need to install some python modules in the Galaxy virtualenv for these
tools to be fully functional:
. /path/to/galaxy/.venv/bin/activate
pip install future chado
deactivate
Environment
The following environment variables must be set:
ENV |
Use |
$GALAXY_CHADO_DBHOST |
Host of the Chado database |
$GALAXY_CHADO_DBNAME |
Name of the Chado database |
$GALAXY_CHADO_DBUSER |
Username to connect to the database |
$GALAXY_CHADO_DBPASS |
Password to connect to the database |
$GALAXY_CHADO_DBSCHEMA |
Database schema. |
$GALAXY_CHADO_DBPORT |
Port of the Chado database |
License
All python scripts and wrappers are licensed under MIT license.