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Repository amplicon_analysis_pipeline

Name: amplicon_analysis_pipeline

Owner: pjbriggs

Synopsis: Analyse paired-end 16S rRNA data from Illumina Miseq

Detailed description:

A Galaxy tool wrapper to Mauro Tutino's Amplicon_analysis pipeline
at https://github.com/MTutino/Amplicon_analysis

The pipeline can analyse paired-end 16S rRNA data from Illumina Miseq
(Casava >= 1.8) and performs: QC and clean up of input data; removal of
singletons and chimeras and building of OTU table and phylogenetic tree;
beta and alpha diversity analysis

Content homepage: https://github.com/MTutino/Amplicon_analysis

Development repository: https://github.com/pjbriggs/Amplicon_analysis-galaxy

Link to this repository: https://toolshed.g2.bx.psu.edu/view/pjbriggs/amplicon_analysis_pipeline/86a12d75ebe4

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/pjbriggs/amplicon_analysis_pipeline

Type: unrestricted

Revision: 4:86a12d75ebe4

This revision can be installed: True

Times cloned / installed: 272

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
amplicon_analysis_pipeline	1.3.6	package

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Amplicon Analysis Pipeline View tool metadata	analyse 16S rRNA data from Illumina Miseq paired-end reads	1.3.6.0	16.01