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Repository mimodd_annotate_variants
Name: mimodd_annotate_variants
Owner: wolma
Synopsis: use MiModD to annotate a vcf variant file with information about the affected genes
install this tool from the suite_mimodd_0_1_5 repository
Link to this repository: https://toolshed.g2.bx.psu.edu/view/wolma/mimodd_annotate_variants/df5ae580b525
Type: unrestricted
Revision: 3:df5ae580b525
This revision can be installed: True
Times cloned / installed: 5
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_zlib_1_2_8 revision dce22a65bac2 owned by wolma (prior install required)
Repository package_python3_zlib_dependent_1_0 revision 34b2ffc538de owned by wolma (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
mimodd 0.1.5 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Predict the effects of SNPs and indels on known genes in the reference genome using SnpEff 1.0.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA