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Repository msp_sr_bowtie_parser

Name: msp_sr_bowtie_parser

Owner: drosofff

Synopsis: Generates hit count lists from bowtie sequence read alignments.

Detailed description:

Generates hit count lists from bowtie sequence read alignments.

Content homepage: http://drosophile.org/

Development repository: https://bitbucket.org/drosofff/gedtools/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/drosofff/msp_sr_bowtie_parser/ca3845fb0b31

Type: unrestricted

Revision: 1:ca3845fb0b31

This revision can be installed: True

Times cloned / installed: 121

Dependencies of this repository

Repository package_ez_setup_0_9 revision 10fd2e2a9f2f owned by iuc (prior install required)

Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)

Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)

Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)

Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)

Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)

Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)

Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)

Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)

Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)

Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
bowtie	0.12.7	package
numpy	1.9	package
pysam	0.7.7	package

Name

Version

Type

bowtie

0.12.7

package

numpy

1.9

package

pysam

0.7.7

package