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Repository mgescan

Name: mgescan

Owner: hyungrolee

Synopsis: MGEScan: Identification of long terminal repeats (LTR) and non-LTR retroelements

Detailed description:

MGEScan - software packages to identify long terminal repeats (LTR) and
        non-LTR retroelements in eukaryotic genomic sequence
        MGEScan is now avaiable on a Galaxy workflow system for identifying
        long terminal repeats (LTR) and non-LTR retroelements in eukaryotic
        genomic sequences. With a Galaxy scientific workflow system, MGEScan
        becomes easier to manage input and output data through its rich and
        flexible web interface. UCSC Table Browser, ENA Browser or local
        storage is used to obtain input genome sequences including a
        traditional file upload. HMMER 3.1b1 is applied to gain speed boosts
        compared to a previous version HMMER 2+. In addition Generic Feature
        Format Version 3 is used for visualization of genome sequence data via
        a web-based genome browser e.g. UCSC Genome Browser or Ensembl Genome
        Browser.

Content homepage: http://mgescan.readthedocs.org

Development repository: https://github.com/MGEScan/mgescan/tree/master/galaxy-toolshed/tools/mgescan

Link to this repository: https://toolshed.g2.bx.psu.edu/view/hyungrolee/mgescan/1234e527defa

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/hyungrolee/mgescan

Type: unrestricted

Revision: 15:1234e527defa

This revision can be installed: True

Times cloned / installed: 461