The Trycycler toolkit includes a set of tools for producing consensus long-read assembly of bacterial genomes. It combines multiple separate long-read assemblies of the same genome and generate a consensus assembly.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trycycler_reconcile_msa
|Name||Description||Version||Minimum Galaxy Version|
|reconcile the contigs within each cluster and perform a multiple sequence alignment||0.5.3||20.01|