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Repository fastq_groomer_parallel
Name: fastq_groomer_parallel
Owner: kevyin
Synopsis: FastQ Parallel Groomer By Garvan Institute, GVL
This is a multithreaded implementation of FASTQ Groomer. We've seen roughly N times speed up with N cores on cluster grade machines

What is different from the original FASTQ Groomer? 
Currently, this parallel version does NOT support legacy FASTQ formats where sequence and quality strings are wrapped (split over multiple lines).

Garvan Institute
http://pwbc.garvan.unsw.edu.au/dokuwiki/
https://genome.edu.au/wiki/GVL
Link to this repository: https://toolshed.g2.bx.psu.edu/view/kevyin/fastq_groomer_parallel/6696b5d4ebc3
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/kevyin/fastq_groomer_parallel
Type: unrestricted
Revision: 7:6696b5d4ebc3
This revision can be installed: True
Times cloned / installed: 1116
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_galaxy_sequence_utils_1_0_1 revision c1ab450748ba owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
galaxy_sequence_utils 1.0.1 package

Categories
Convert Formats - Tools for converting data formats
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data