Repository suite_qiime2_core
Owner: q2d2
Synopsis: The QIIME 2 'core' distribution
Type: repository_suite_definition
Revision: 0:3f011fac899d
This revision can be installed: True
Times cloned / installed: 87
Dependencies of this repository

Repository qiime2_core__tools__import_fastq revision af1adcda927c owned by q2d2
Repository qiime2_core__tools__import revision f9e68fa06585 owned by q2d2
Repository qiime2_core__tools__export revision 37e37518cad1 owned by q2d2
Repository qiime2__alignment__mafft revision c4a4ba3c7a9c owned by q2d2
Repository qiime2__alignment__mafft_add revision 51e7e9d2c302 owned by q2d2
Repository qiime2__alignment__mask revision 1d37aa0aed4f owned by q2d2
Repository qiime2__composition__da_barplot revision 915545a7c0f9 owned by q2d2
Repository qiime2__composition__ancom revision f072d901c63c owned by q2d2
Repository qiime2__composition__add_pseudocount revision cd98e4bb92ee owned by q2d2
Repository qiime2__composition__tabulate revision 45a7de813cd5 owned by q2d2
Repository qiime2__composition__ancombc revision 4b71e36cc3d2 owned by q2d2
Repository qiime2__cutadapt__demux_single revision fcb0c9bd84a3 owned by q2d2
Repository qiime2__cutadapt__trim_single revision 9a9d639bd2ec owned by q2d2
Repository qiime2__cutadapt__demux_paired revision 9b5a775806be owned by q2d2
Repository qiime2__cutadapt__trim_paired revision b2b61aecb444 owned by q2d2
Repository qiime2__dada2__denoise_ccs revision a22807aaff34 owned by q2d2
Repository qiime2__dada2__denoise_paired revision d2bf79e0bd52 owned by q2d2
Repository qiime2__dada2__denoise_single revision a2112f424054 owned by q2d2
Repository qiime2__dada2__denoise_pyro revision 16c1fce384ab owned by q2d2
Repository qiime2__deblur__visualize_stats revision e02092a0b2db owned by q2d2
Repository qiime2__deblur__denoise_other revision 27ba31d2202b owned by q2d2
Repository qiime2__deblur__denoise_16s revision ab9ed5ac604c owned by q2d2
Repository qiime2__demux__tabulate_read_counts revision 028492b9d028 owned by q2d2
Repository qiime2__demux__summarize revision acb0f8837379 owned by q2d2
Repository qiime2__demux__emp_single revision 19e2495b60e8 owned by q2d2
Repository qiime2__demux__subsample_single revision 26139ebc17ea owned by q2d2
Repository qiime2__demux__filter_samples revision b507d1f2196c owned by q2d2
Repository qiime2__demux__emp_paired revision a9ce731fab29 owned by q2d2
Repository qiime2__demux__partition_samples_paired revision c8df367887ca owned by q2d2
Repository qiime2__demux__partition_samples_single revision 84111e1c01f0 owned by q2d2
Repository qiime2__demux__subsample_paired revision 7b44ee1e60ea owned by q2d2
Repository qiime2__diversity__core_metrics revision 2b7bcbf8bdf3 owned by q2d2
Repository qiime2__diversity__beta_correlation revision 26b99164f629 owned by q2d2
Repository qiime2__diversity__alpha_group_significance revision eae22172c84e owned by q2d2
Repository qiime2__diversity__bioenv revision 1e4f0944ae33 owned by q2d2
Repository qiime2__diversity__core_metrics_phylogenetic revision d14296c8a1b8 owned by q2d2
Repository qiime2__diversity__pcoa revision 250e13179e54 owned by q2d2
Repository qiime2__diversity__adonis revision 472a46b5d416 owned by q2d2
Repository qiime2__diversity__partial_procrustes revision f7b6b5e86608 owned by q2d2
Repository qiime2__diversity__beta_group_significance revision 35c850ccce45 owned by q2d2
Repository qiime2__diversity__alpha_phylogenetic revision 6af85aa9f62d owned by q2d2
Repository qiime2__diversity__beta_phylogenetic revision 83d06804b15c owned by q2d2
Repository qiime2__diversity__alpha_rarefaction revision a19425489a68 owned by q2d2
Repository qiime2__diversity__pcoa_biplot revision 30a01d00df77 owned by q2d2
Repository qiime2__diversity__beta revision 7ed55f1323ee owned by q2d2
Repository qiime2__diversity__alpha revision 5c2c4ceabe7e owned by q2d2
Repository qiime2__diversity__filter_distance_matrix revision c6cab84f4198 owned by q2d2
Repository qiime2__diversity__procrustes_analysis revision 888d37bd0b9b owned by q2d2
Repository qiime2__diversity__mantel revision 9a97bf1e0e05 owned by q2d2
Repository qiime2__diversity__beta_rarefaction revision 08aa9fb4ffc8 owned by q2d2
Repository qiime2__diversity__umap revision 955fd41ac481 owned by q2d2
Repository qiime2__diversity__filter_alpha_diversity revision 8334d515cc22 owned by q2d2
Repository qiime2__diversity__alpha_correlation revision 339546317bfa owned by q2d2
Repository qiime2__diversity__tsne revision f5dde68b544d owned by q2d2
Repository qiime2__diversity_lib__beta_phylogenetic_meta_passthrough revision 4de686329a37 owned by q2d2
Repository qiime2__diversity_lib__bray_curtis revision 4111b5b17fd4 owned by q2d2
Repository qiime2__diversity_lib__beta_passthrough revision da6fdc7618c7 owned by q2d2
Repository qiime2__diversity_lib__unweighted_unifrac revision 7de32a239176 owned by q2d2
Repository qiime2__diversity_lib__jaccard revision a80fde700012 owned by q2d2
Repository qiime2__diversity_lib__pielou_evenness revision a10d8f198b93 owned by q2d2
Repository qiime2__diversity_lib__weighted_unifrac revision eafeb0b89ece owned by q2d2
Repository qiime2__diversity_lib__beta_phylogenetic_passthrough revision 2be808ff0cd2 owned by q2d2
Repository qiime2__diversity_lib__alpha_passthrough revision 444cd66d6101 owned by q2d2
Repository qiime2__diversity_lib__faith_pd revision c5a92b4cb5db owned by q2d2
Repository qiime2__diversity_lib__shannon_entropy revision 7f8e31cd33ed owned by q2d2
Repository qiime2__diversity_lib__observed_features revision a08147f79fe9 owned by q2d2
Repository qiime2__emperor__plot revision 41cb62f3cb7b owned by q2d2
Repository qiime2__emperor__procrustes_plot revision 4a9f1bf4499e owned by q2d2
Repository qiime2__emperor__biplot revision 6830d5e1f0db owned by q2d2
Repository qiime2__feature_classifier__classify_consensus_blast revision 1ca4b5d6ea40 owned by q2d2
Repository qiime2__feature_classifier__blast revision 6f881a1c40be owned by q2d2
Repository qiime2__feature_classifier__fit_classifier_naive_bayes revision a6c8858199f5 owned by q2d2
Repository qiime2__feature_classifier__classify_consensus_vsearch revision 1006c36b2b57 owned by q2d2
Repository qiime2__feature_classifier__classify_hybrid_vsearch_sklearn revision 9162ded52c6a owned by q2d2
Repository qiime2__feature_classifier__makeblastdb revision 2a24d33467d8 owned by q2d2
Repository qiime2__feature_classifier__vsearch_global revision 84d83752cc49 owned by q2d2
Repository qiime2__feature_classifier__extract_reads revision 4ad70e7b2dba owned by q2d2
Repository qiime2__feature_classifier__classify_sklearn revision d6632af373ab owned by q2d2
Repository qiime2__feature_classifier__fit_classifier_sklearn revision fe5fc2afd727 owned by q2d2
Repository qiime2__feature_classifier__find_consensus_annotation revision 333ce5304712 owned by q2d2
Repository qiime2__feature_table__filter_features_conditionally revision 6c8f74d8df6d owned by q2d2
Repository qiime2__feature_table__core_features revision 5bd93c10087b owned by q2d2
Repository qiime2__feature_table__filter_samples revision 40647f5aa13b owned by q2d2
Repository qiime2__feature_table__tabulate_seqs revision 9fe85eec5420 owned by q2d2
Repository qiime2__feature_table__tabulate_feature_frequencies revision 7f258851ecca owned by q2d2
Repository qiime2__feature_table__filter_features revision d6536f0c370c owned by q2d2
Repository qiime2__feature_table__summarize revision 517cc51856dd owned by q2d2
Repository qiime2__feature_table__group revision d8d9cde18805 owned by q2d2
Repository qiime2__feature_table__transpose revision acadff77dd50 owned by q2d2
Repository qiime2__feature_table__tabulate_sample_frequencies revision a0b7ea0bc025 owned by q2d2
Repository qiime2__feature_table__heatmap revision 75a470897973 owned by q2d2
Repository qiime2__feature_table__presence_absence revision 02f7e34192b1 owned by q2d2
Repository qiime2__feature_table__filter_seqs revision 3d5a194fbdcb owned by q2d2
Repository qiime2__feature_table__rename_ids revision f73f0cda6560 owned by q2d2
Repository qiime2__feature_table__split revision 4098a583c0d7 owned by q2d2
Repository qiime2__feature_table__summarize_plus revision 20aeb1d1b9d8 owned by q2d2
Repository qiime2__feature_table__relative_frequency revision b775f27fe8db owned by q2d2
Repository qiime2__feature_table__merge_taxa revision c7299241e3a7 owned by q2d2
Repository qiime2__feature_table__rarefy revision 76f44ad77e0c owned by q2d2
Repository qiime2__feature_table__merge_seqs revision 656b878d4049 owned by q2d2
Repository qiime2__feature_table__subsample_ids revision 97eda8a63e9b owned by q2d2
Repository qiime2__feature_table__merge revision 02074619b5e8 owned by q2d2
Repository qiime2__fragment_insertion__classify_otus_experimental revision 2821f5e19fe7 owned by q2d2
Repository qiime2__fragment_insertion__sepp revision 157b7ea4cd38 owned by q2d2
Repository qiime2__fragment_insertion__filter_features revision fef2604b8a87 owned by q2d2
Repository qiime2__gneiss__ilr_phylogenetic_differential revision 9dedc5b9b732 owned by q2d2
Repository qiime2__gneiss__ilr_phylogenetic revision 742e0648a108 owned by q2d2
Repository qiime2__gneiss__dendrogram_heatmap revision 78bd3306c2d5 owned by q2d2
Repository qiime2__gneiss__assign_ids revision 3b50918cb7ec owned by q2d2
Repository qiime2__gneiss__correlation_clustering revision ca5a3976d699 owned by q2d2
Repository qiime2__gneiss__gradient_clustering revision 76fb7a319e4f owned by q2d2
Repository qiime2__gneiss__ilr_phylogenetic_ordination revision f55de040b84c owned by q2d2
Repository qiime2__gneiss__ilr_hierarchical revision d0feca181800 owned by q2d2
Repository qiime2__longitudinal__plot_feature_volatility revision 6fd0dec3112c owned by q2d2
Repository qiime2__longitudinal__nmit revision d17232fb5897 owned by q2d2
Repository qiime2__longitudinal__anova revision b281d1caa69c owned by q2d2
Repository qiime2__longitudinal__pairwise_distances revision 2dba2c15b48e owned by q2d2
Repository qiime2__longitudinal__feature_volatility revision e1f34a303e1c owned by q2d2
Repository qiime2__longitudinal__maturity_index revision ae21a4eac775 owned by q2d2
Repository qiime2__longitudinal__pairwise_differences revision d93df4dd5168 owned by q2d2
Repository qiime2__longitudinal__linear_mixed_effects revision d67d2a61549b owned by q2d2
Repository qiime2__longitudinal__volatility revision 7c4629181605 owned by q2d2
Repository qiime2__longitudinal__first_differences revision c6a55025afec owned by q2d2
Repository qiime2__longitudinal__first_distances revision 2acedcd22341 owned by q2d2
Repository qiime2__metadata__merge revision 9ec6c7da58d2 owned by q2d2
Repository qiime2__metadata__shuffle_groups revision e5920de13a94 owned by q2d2
Repository qiime2__metadata__distance_matrix revision 3ff91b9bf4bb owned by q2d2
Repository qiime2__metadata__tabulate revision f53749d24081 owned by q2d2
Repository qiime2__phylogeny__align_to_tree_mafft_raxml revision f094149c5203 owned by q2d2
Repository qiime2__phylogeny__fasttree revision 91061b2e9766 owned by q2d2
Repository qiime2__phylogeny__iqtree_ultrafast_bootstrap revision d29e3e6a10fd owned by q2d2
Repository qiime2__phylogeny__align_to_tree_mafft_iqtree revision 3258ec546d07 owned by q2d2
Repository qiime2__phylogeny__midpoint_root revision ad4c87cd901a owned by q2d2
Repository qiime2__phylogeny__filter_table revision 167ee24ffe2f owned by q2d2
Repository qiime2__phylogeny__raxml_rapid_bootstrap revision eb6c15cd603b owned by q2d2
Repository qiime2__phylogeny__iqtree revision 6d01299f597a owned by q2d2
Repository qiime2__phylogeny__align_to_tree_mafft_fasttree revision 39b5b030033a owned by q2d2
Repository qiime2__phylogeny__raxml revision a874d4dfbac6 owned by q2d2
Repository qiime2__phylogeny__filter_tree revision 6106d14aabd1 owned by q2d2
Repository qiime2__phylogeny__robinson_foulds revision a43f0d5cfd3f owned by q2d2
Repository qiime2__quality_control__exclude_seqs revision 051ac848cd6b owned by q2d2
Repository qiime2__quality_control__evaluate_taxonomy revision de2941482b65 owned by q2d2
Repository qiime2__quality_control__decontam_identify_batches revision 1c23691fa0c5 owned by q2d2
Repository qiime2__quality_control__decontam_score_viz revision b9547e911efd owned by q2d2
Repository qiime2__quality_control__decontam_remove revision ceb8db9c0509 owned by q2d2
Repository qiime2__quality_control__bowtie2_build revision 7291a764b254 owned by q2d2
Repository qiime2__quality_control__decontam_identify revision 99bf4ed8cb61 owned by q2d2
Repository qiime2__quality_control__evaluate_composition revision 4f9bd4924e66 owned by q2d2
Repository qiime2__quality_control__evaluate_seqs revision 53f089ad7161 owned by q2d2
Repository qiime2__quality_control__filter_reads revision 4a4e207de234 owned by q2d2
Repository qiime2__quality_filter__q_score revision 363bb431c355 owned by q2d2
Repository qiime2__sample_classifier__classify_samples_ncv revision f00cbad41c55 owned by q2d2
Repository qiime2__sample_classifier__heatmap revision 8fa6957e6cb0 owned by q2d2
Repository qiime2__sample_classifier__summarize revision 10191f1db325 owned by q2d2
Repository qiime2__sample_classifier__classify_samples_from_dist revision 2dad5e35f34c owned by q2d2
Repository qiime2__sample_classifier__scatterplot revision fcd6d3d308b7 owned by q2d2
Repository qiime2__sample_classifier__fit_classifier revision 745c0bca48dd owned by q2d2
Repository qiime2__sample_classifier__confusion_matrix revision 0307995b05a4 owned by q2d2
Repository qiime2__sample_classifier__predict_classification revision 4b8696ef6dbe owned by q2d2
Repository qiime2__sample_classifier__fit_regressor revision c2c6554fda49 owned by q2d2
Repository qiime2__sample_classifier__metatable revision ac49a2a49935 owned by q2d2
Repository qiime2__sample_classifier__split_table revision d325f1c254c5 owned by q2d2
Repository qiime2__sample_classifier__regress_samples_ncv revision 629fe9f7d95a owned by q2d2
Repository qiime2__sample_classifier__predict_regression revision 6e134166916b owned by q2d2
Repository qiime2__sample_classifier__regress_samples revision f28bc42125b6 owned by q2d2
Repository qiime2__sample_classifier__classify_samples revision 84156d6e1291 owned by q2d2
Repository qiime2__taxa__collapse revision f17ae5fa0c60 owned by q2d2
Repository qiime2__taxa__filter_seqs revision 22f155638105 owned by q2d2
Repository qiime2__taxa__barplot revision d9d69991f2b2 owned by q2d2
Repository qiime2__taxa__filter_table revision a8972ecf15c1 owned by q2d2
Repository qiime2__vsearch__cluster_features_de_novo revision 3377d6ce369c owned by q2d2
Repository qiime2__vsearch__merge_pairs revision 4756c43a7181 owned by q2d2
Repository qiime2__vsearch__cluster_features_closed_reference revision f1a4c7d2e5a7 owned by q2d2
Repository qiime2__vsearch__uchime_ref revision f13c03b34e2d owned by q2d2
Repository qiime2__vsearch__fastq_stats revision 6acd7854064f owned by q2d2
Repository qiime2__vsearch__dereplicate_sequences revision 9c9e6b7d7286 owned by q2d2
Repository qiime2__vsearch__uchime_denovo revision 40ea1722fbab owned by q2d2
Repository qiime2__vsearch__cluster_features_open_reference revision 3dbcb981c4c9 owned by q2d2

Categories
Statistics - Tools for generating statistics
Metagenomics - Tools enabling the study of metagenomes
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis