Repository suite_qiime2_core
Name: suite_qiime2_core
Owner: q2d2
Synopsis: The QIIME 2 'core' (now amplicon) distribution
Link to this repository: https://toolshed.g2.bx.psu.edu/view/q2d2/suite_qiime2_core/1dfccc639d50
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/q2d2/suite_qiime2_core
Type: repository_suite_definition
Revision: 2:1dfccc639d50
This revision can be installed: True
Times cloned / installed: 110
Dependencies of this repository

Repository dependencies - The QIIME 2 'core' (now amplicon) distribution
Repository qiime2_core__tools__import_fastq revision 1c3937219d27 owned by q2d2
Repository qiime2_core__tools__import revision 8a0db69428c7 owned by q2d2
Repository qiime2_core__tools__export revision 40bcc0e139fa owned by q2d2
Repository qiime2__alignment__mask revision d71423249631 owned by q2d2
Repository qiime2__alignment__mafft_add revision 793348b25298 owned by q2d2
Repository qiime2__alignment__mafft revision da8c194c5dc5 owned by q2d2
Repository qiime2__composition__ancom revision c59b1d501ecf owned by q2d2
Repository qiime2__composition__add_pseudocount revision e2822b9553cb owned by q2d2
Repository qiime2__composition__tabulate revision cb1a60431256 owned by q2d2
Repository qiime2__composition__da_barplot revision 7953212dace1 owned by q2d2
Repository qiime2__composition__ancombc revision 952686c734e9 owned by q2d2
Repository qiime2__cutadapt__trim_single revision f8d5e0d4dfec owned by q2d2
Repository qiime2__cutadapt__demux_paired revision 12dfb163a004 owned by q2d2
Repository qiime2__cutadapt__demux_single revision 47652cda9695 owned by q2d2
Repository qiime2__cutadapt__trim_paired revision e82bd0e0c7ad owned by q2d2
Repository qiime2__dada2__denoise_paired revision 933b92011b91 owned by q2d2
Repository qiime2__dada2__denoise_ccs revision e73ff752eb45 owned by q2d2
Repository qiime2__dada2__denoise_single revision 354f63459d37 owned by q2d2
Repository qiime2__dada2__denoise_pyro revision d9e75c4f54b9 owned by q2d2
Repository qiime2__deblur__denoise_16s revision fec8b0edda39 owned by q2d2
Repository qiime2__deblur__visualize_stats revision 2e4eafd6f1f6 owned by q2d2
Repository qiime2__deblur__denoise_other revision 816ca3000a39 owned by q2d2
Repository qiime2__demux__emp_single revision 8e01d149bcdb owned by q2d2
Repository qiime2__demux__summarize revision 1a13e87462a0 owned by q2d2
Repository qiime2__demux__tabulate_read_counts revision a70962896120 owned by q2d2
Repository qiime2__demux__subsample_paired revision 669e59a2a229 owned by q2d2
Repository qiime2__demux__subsample_single revision 76384b6b3d90 owned by q2d2
Repository qiime2__demux__partition_samples_single revision bc1a46b06436 owned by q2d2
Repository qiime2__demux__partition_samples_paired revision 002ddf3e5bb1 owned by q2d2
Repository qiime2__demux__emp_paired revision 8edb4dc16d6e owned by q2d2
Repository qiime2__demux__filter_samples revision 7595f1cbe5b7 owned by q2d2
Repository qiime2__diversity__tsne revision eccbb594cd17 owned by q2d2
Repository qiime2__diversity__alpha_phylogenetic revision 5c0e7186a169 owned by q2d2
Repository qiime2__diversity__pcoa revision 0a6baa36f13c owned by q2d2
Repository qiime2__diversity__beta_phylogenetic revision 394712a51004 owned by q2d2
Repository qiime2__diversity__beta_group_significance revision a0d20b8b681e owned by q2d2
Repository qiime2__diversity__core_metrics_phylogenetic revision 7fc930fc43cf owned by q2d2
Repository qiime2__diversity__alpha_correlation revision 356a07706de8 owned by q2d2
Repository qiime2__diversity__pcoa_biplot revision 41a52cf11f2d owned by q2d2
Repository qiime2__diversity__core_metrics revision 703db464b072 owned by q2d2
Repository qiime2__diversity__beta revision 97a8f4d7b51d owned by q2d2
Repository qiime2__diversity__partial_procrustes revision 42734f369857 owned by q2d2
Repository qiime2__diversity__alpha revision 324ab5e710fa owned by q2d2
Repository qiime2__diversity__procrustes_analysis revision db458dd840c2 owned by q2d2
Repository qiime2__diversity__filter_distance_matrix revision 6d85ed80f077 owned by q2d2
Repository qiime2__diversity__alpha_group_significance revision 96988c25ca01 owned by q2d2
Repository qiime2__diversity__bioenv revision 21ca3e4d0f06 owned by q2d2
Repository qiime2__diversity__mantel revision 39109e3921ee owned by q2d2
Repository qiime2__diversity__beta_correlation revision 93d88cdf089a owned by q2d2
Repository qiime2__diversity__adonis revision 4701a5b2b60d owned by q2d2
Repository qiime2__diversity__umap revision 9c7d4870e7c2 owned by q2d2
Repository qiime2__diversity__alpha_rarefaction revision 22bfda174157 owned by q2d2
Repository qiime2__diversity__filter_alpha_diversity revision 35e7602594d8 owned by q2d2
Repository qiime2__diversity__beta_rarefaction revision 1506cdb7caad owned by q2d2
Repository qiime2__diversity_lib__beta_phylogenetic_passthrough revision 5ab19b2ef7d8 owned by q2d2
Repository qiime2__diversity_lib__beta_passthrough revision 7bc5ff8456ff owned by q2d2
Repository qiime2__diversity_lib__beta_phylogenetic_meta_passthrough revision a6205ca8caec owned by q2d2
Repository qiime2__diversity_lib__alpha_passthrough revision 71a10fd28964 owned by q2d2
Repository qiime2__diversity_lib__shannon_entropy revision b2ccb5709bed owned by q2d2
Repository qiime2__diversity_lib__weighted_unifrac revision a166647c366a owned by q2d2
Repository qiime2__diversity_lib__jaccard revision df2902af58c1 owned by q2d2
Repository qiime2__diversity_lib__faith_pd revision f3e3dfe874f0 owned by q2d2
Repository qiime2__diversity_lib__pielou_evenness revision 3fff9475b959 owned by q2d2
Repository qiime2__diversity_lib__unweighted_unifrac revision 16f6f1bb70df owned by q2d2
Repository qiime2__diversity_lib__bray_curtis revision 84b38b24a50e owned by q2d2
Repository qiime2__diversity_lib__observed_features revision 89d7fabc1120 owned by q2d2
Repository qiime2__emperor__plot revision 64a9ebc05ae4 owned by q2d2
Repository qiime2__emperor__procrustes_plot revision e2e3685e9ead owned by q2d2
Repository qiime2__emperor__biplot revision 500d81d6d22d owned by q2d2
Repository qiime2__feature_classifier__classify_consensus_vsearch revision f965e6e951e7 owned by q2d2
Repository qiime2__feature_classifier__makeblastdb revision da645e35b7b7 owned by q2d2
Repository qiime2__feature_classifier__vsearch_global revision 7ca8ce947d06 owned by q2d2
Repository qiime2__feature_classifier__classify_sklearn revision 771d8be25d7a owned by q2d2
Repository qiime2__feature_classifier__classify_hybrid_vsearch_sklearn revision 6f3e4b4cd85f owned by q2d2
Repository qiime2__feature_classifier__classify_consensus_blast revision 0024a2733c77 owned by q2d2
Repository qiime2__feature_classifier__fit_classifier_naive_bayes revision 1088a30ad72f owned by q2d2
Repository qiime2__feature_classifier__find_consensus_annotation revision b6121b90c568 owned by q2d2
Repository qiime2__feature_classifier__fit_classifier_sklearn revision b58536f29139 owned by q2d2
Repository qiime2__feature_classifier__extract_reads revision 9db411be36ba owned by q2d2
Repository qiime2__feature_classifier__blast revision 24b72d60805e owned by q2d2
Repository qiime2__feature_table__relative_frequency revision eaada56f497a owned by q2d2
Repository qiime2__feature_table__split revision b238451b210e owned by q2d2
Repository qiime2__feature_table__tabulate_seqs revision c4570ced1d88 owned by q2d2
Repository qiime2__feature_table__filter_features revision 10954feb4893 owned by q2d2
Repository qiime2__feature_table__tabulate_feature_frequencies revision d2e800f419d0 owned by q2d2
Repository qiime2__feature_table__rarefy revision adf22a045073 owned by q2d2
Repository qiime2__feature_table__merge_taxa revision a96e86eac4e3 owned by q2d2
Repository qiime2__feature_table__core_features revision 0b1424ea3495 owned by q2d2
Repository qiime2__feature_table__tabulate_sample_frequencies revision cd06878d28b0 owned by q2d2
Repository qiime2__feature_table__subsample_ids revision d50895a7ed04 owned by q2d2
Repository qiime2__feature_table__summarize_plus revision 67626d015207 owned by q2d2
Repository qiime2__feature_table__rename_ids revision 8ae8ef4804fa owned by q2d2
Repository qiime2__feature_table__transpose revision 8a3e71857c0a owned by q2d2
Repository qiime2__feature_table__heatmap revision 1579e3bbdc11 owned by q2d2
Repository qiime2__feature_table__summarize revision d0f2249afe30 owned by q2d2
Repository qiime2__feature_table__filter_seqs revision 8aec6a03bd3f owned by q2d2
Repository qiime2__feature_table__merge_seqs revision 6d3775f3a859 owned by q2d2
Repository qiime2__feature_table__group revision 4acd06f54adc owned by q2d2
Repository qiime2__feature_table__filter_features_conditionally revision 46bc11016e31 owned by q2d2
Repository qiime2__feature_table__merge revision b5eb47c65e65 owned by q2d2
Repository qiime2__feature_table__presence_absence revision d853b44a37b5 owned by q2d2
Repository qiime2__feature_table__filter_samples revision 0597a61cb4b5 owned by q2d2
Repository qiime2__fragment_insertion__filter_features revision b27d577c13e0 owned by q2d2
Repository qiime2__fragment_insertion__classify_otus_experimental revision 62764fe71186 owned by q2d2
Repository qiime2__fragment_insertion__sepp revision a74f06287b8c owned by q2d2
Repository qiime2__rescript__get_silva_data revision 20d1a7bf2757 owned by q2d2
Repository qiime2__rescript__evaluate_classifications revision 0161f3d556a8 owned by q2d2
Repository qiime2__rescript__parse_silva_taxonomy revision b64f00b5acfa owned by q2d2
Repository qiime2__rescript__orient_seqs revision 2d3f4a0e1ec5 owned by q2d2
Repository qiime2__rescript__merge_taxa revision 42929e04704a owned by q2d2
Repository qiime2__rescript__degap_seqs revision cbbe64c579b2 owned by q2d2
Repository qiime2__rescript__cull_seqs revision ae9cfce668bf owned by q2d2
Repository qiime2__rescript__get_ncbi_data_protein revision f2f4a47e42a9 owned by q2d2
Repository qiime2__rescript__get_bv_brc_metadata revision f3cd42768927 owned by q2d2
Repository qiime2__rescript__get_gtdb_data revision 54890a41b15d owned by q2d2
Repository qiime2__rescript__filter_seqs_length revision 35d391d8756b owned by q2d2
Repository qiime2__rescript__subsample_fasta revision 0b5b1ceb42ad owned by q2d2
Repository qiime2__rescript__get_ncbi_data revision beec4fed7bf4 owned by q2d2
Repository qiime2__rescript__filter_seqs_length_by_taxon revision 0dfcf60f2390 owned by q2d2
Repository qiime2__rescript__extract_seq_segments revision 8d441435b9e6 owned by q2d2
Repository qiime2__rescript__evaluate_seqs revision 1a178efacf75 owned by q2d2
Repository qiime2__rescript__get_bv_brc_genomes revision 9dd05f5c60b9 owned by q2d2
Repository qiime2__rescript__evaluate_taxonomy revision c779ab61c4c0 owned by q2d2
Repository qiime2__rescript__get_bv_brc_genome_features revision c735738cecca owned by q2d2
Repository qiime2__rescript__get_ncbi_genomes revision f8ac470cc306 owned by q2d2
Repository qiime2__rescript__trim_alignment revision 8659a1689f71 owned by q2d2
Repository qiime2__rescript__filter_taxa revision 6097fd866609 owned by q2d2
Repository qiime2__rescript__get_unite_data revision 9122ff0509af owned by q2d2
Repository qiime2__rescript__reverse_transcribe revision 88d424eb235a owned by q2d2
Repository qiime2__rescript__dereplicate revision db6158738086 owned by q2d2
Repository qiime2__rescript__evaluate_cross_validate revision 13fdc73a368d owned by q2d2
Repository qiime2__rescript__evaluate_fit_classifier revision ca24282a83fc owned by q2d2
Repository qiime2__rescript__edit_taxonomy revision f69e24d4703b owned by q2d2
Repository qiime2__longitudinal__first_distances revision 2c445317c0c1 owned by q2d2
Repository qiime2__longitudinal__nmit revision 4facf6ad69be owned by q2d2
Repository qiime2__longitudinal__pairwise_differences revision 82847cdbf7fd owned by q2d2
Repository qiime2__longitudinal__plot_feature_volatility revision 2b93f7a91399 owned by q2d2
Repository qiime2__longitudinal__linear_mixed_effects revision d10f755328ea owned by q2d2
Repository qiime2__longitudinal__first_differences revision 2cb105e00a71 owned by q2d2
Repository qiime2__longitudinal__volatility revision 646d4929b1ea owned by q2d2
Repository qiime2__longitudinal__pairwise_distances revision c02040f48a72 owned by q2d2
Repository qiime2__longitudinal__maturity_index revision 1945315814fc owned by q2d2
Repository qiime2__longitudinal__feature_volatility revision ecc06a63663d owned by q2d2
Repository qiime2__longitudinal__anova revision 649a6f5a7ff8 owned by q2d2
Repository qiime2__metadata__shuffle_groups revision d310fdba1caf owned by q2d2
Repository qiime2__metadata__merge revision ccb59f9f76bf owned by q2d2
Repository qiime2__metadata__distance_matrix revision 855d0a9bc79c owned by q2d2
Repository qiime2__metadata__tabulate revision 9857be21dcaf owned by q2d2
Repository qiime2__phylogeny__align_to_tree_mafft_iqtree revision ec98b720efc9 owned by q2d2
Repository qiime2__phylogeny__align_to_tree_mafft_fasttree revision b552bc376487 owned by q2d2
Repository qiime2__phylogeny__align_to_tree_mafft_raxml revision 5d20cf180904 owned by q2d2
Repository qiime2__phylogeny__fasttree revision 139fe749b0e5 owned by q2d2
Repository qiime2__phylogeny__iqtree revision 77c94392c3e8 owned by q2d2
Repository qiime2__phylogeny__midpoint_root revision 0a0e30476122 owned by q2d2
Repository qiime2__phylogeny__filter_table revision fa11896bafbb owned by q2d2
Repository qiime2__phylogeny__raxml_rapid_bootstrap revision 9d523344e9fb owned by q2d2
Repository qiime2__phylogeny__filter_tree revision d24d147a225d owned by q2d2
Repository qiime2__phylogeny__robinson_foulds revision 48893627c8f9 owned by q2d2
Repository qiime2__phylogeny__iqtree_ultrafast_bootstrap revision e682a7a080a0 owned by q2d2
Repository qiime2__phylogeny__raxml revision a40eb1afbd0f owned by q2d2
Repository qiime2__quality_control__bowtie2_build revision 3a464de609d5 owned by q2d2
Repository qiime2__quality_control__decontam_remove revision 239447c3062a owned by q2d2
Repository qiime2__quality_control__decontam_score_viz revision 73408b72d0ef owned by q2d2
Repository qiime2__quality_control__filter_reads revision 8ea205bf4e7b owned by q2d2
Repository qiime2__quality_control__evaluate_taxonomy revision 8e6a404fb338 owned by q2d2
Repository qiime2__quality_control__decontam_identify_batches revision 31be63fff5db owned by q2d2
Repository qiime2__quality_control__exclude_seqs revision 505d6f366518 owned by q2d2
Repository qiime2__quality_control__decontam_identify revision 653d55f191df owned by q2d2
Repository qiime2__quality_control__evaluate_seqs revision f45d42427237 owned by q2d2
Repository qiime2__quality_control__evaluate_composition revision d9c71e139c9b owned by q2d2
Repository qiime2__quality_filter__q_score revision d786401d6619 owned by q2d2
Repository qiime2__sample_classifier__regress_samples_ncv revision c468c032ee23 owned by q2d2
Repository qiime2__sample_classifier__scatterplot revision 22e510854bb2 owned by q2d2
Repository qiime2__sample_classifier__fit_regressor revision e44450046a90 owned by q2d2
Repository qiime2__sample_classifier__classify_samples revision 6c18cbbf0f5b owned by q2d2
Repository qiime2__sample_classifier__regress_samples revision a400ec06bae3 owned by q2d2
Repository qiime2__sample_classifier__fit_classifier revision 2116b939ff07 owned by q2d2
Repository qiime2__sample_classifier__metatable revision 905113a20ca7 owned by q2d2
Repository qiime2__sample_classifier__classify_samples_ncv revision ab96421e61c5 owned by q2d2
Repository qiime2__sample_classifier__split_table revision b0af6d277910 owned by q2d2
Repository qiime2__sample_classifier__summarize revision e56a7f3e8b05 owned by q2d2
Repository qiime2__sample_classifier__predict_regression revision e0913981ccc4 owned by q2d2
Repository qiime2__sample_classifier__confusion_matrix revision 3164358cd72f owned by q2d2
Repository qiime2__sample_classifier__predict_classification revision 555cb8da4688 owned by q2d2
Repository qiime2__sample_classifier__classify_samples_from_dist revision 5f37765a9e5e owned by q2d2
Repository qiime2__sample_classifier__heatmap revision e2c3a69905fe owned by q2d2
Repository qiime2__stats__mann_whitney_u_facet revision 3860c369685d owned by q2d2
Repository qiime2__stats__alpha_group_significance revision d6f4c80a29a2 owned by q2d2
Repository qiime2__stats__prep_alpha_distribution revision c7ae38450ff9 owned by q2d2
Repository qiime2__stats__facet_within revision 5349488971e9 owned by q2d2
Repository qiime2__stats__facet_across revision caf764ebca30 owned by q2d2
Repository qiime2__stats__mann_whitney_u revision 6878ec3548d8 owned by q2d2
Repository qiime2__stats__wilcoxon_srt_facet revision 181c3cf66bd8 owned by q2d2
Repository qiime2__stats__plot_rainclouds revision 0699c24331f4 owned by q2d2
Repository qiime2__stats__wilcoxon_srt revision 3cbec5fc30ad owned by q2d2
Repository qiime2__stats__collate_stats revision 10e19418eedb owned by q2d2
Repository qiime2__taxa__filter_table revision ca4a6aa29205 owned by q2d2
Repository qiime2__taxa__filter_seqs revision 526b35d5a4cd owned by q2d2
Repository qiime2__taxa__barplot revision 3da2f87501ee owned by q2d2
Repository qiime2__taxa__collapse revision e8ab6eff4cf8 owned by q2d2
Repository qiime2__vizard__boxplot revision 765052908e52 owned by q2d2
Repository qiime2__vizard__scatterplot_2d revision acada7129b61 owned by q2d2
Repository qiime2__vizard__heatmap revision 45c348a09fa0 owned by q2d2
Repository qiime2__vizard__lineplot revision df9f1ff48c29 owned by q2d2
Repository qiime2__vsearch__cluster_features_de_novo revision 31b630d08cda owned by q2d2
Repository qiime2__vsearch__merge_pairs revision 421396209ac3 owned by q2d2
Repository qiime2__vsearch__uchime_ref revision 74b478765f80 owned by q2d2
Repository qiime2__vsearch__dereplicate_sequences revision d33fbe0e2c37 owned by q2d2
Repository qiime2__vsearch__cluster_features_open_reference revision 576b090ccd63 owned by q2d2
Repository qiime2__vsearch__fastq_stats revision b770f74843a4 owned by q2d2
Repository qiime2__vsearch__cluster_features_closed_reference revision 89648217a7ef owned by q2d2
Repository qiime2__vsearch__uchime_denovo revision c328a49a8ebf owned by q2d2

Categories
Statistics - Tools for generating statistics
Metagenomics - Tools enabling the study of metagenomes
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis