Repository centrifuge
Name: centrifuge
Owner: jvolkening
Synopsis: Centrifuge - classifier for metagenomic sequences
Centrifuge is a very rapid and memory-efficient system for the
classification of DNA sequences from microbial samples, with better
sensitivity than and comparable accuracy to other leading systems. The
system uses a novel indexing scheme based on the Burrows-Wheeler transform
(BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the
metagenomic classification problem. Centrifuge requires a relatively small
index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast
classification speed, allowing it to process a typical DNA sequencing run
within an hour. Together these advances enable timely and accurate
analysis of large metagenomics data sets on conventional desktop
computers. 
Type: unrestricted
Revision: 0:be7bba8229c6
This revision can be installed: True
Times cloned / installed: 100

Contents of this repository

Name Description Version Minimum Galaxy Version
Read-based metagenome characterization 1.0.4_beta 16.01

Categories
Metagenomics - Tools enabling the study of metagenomes